Molecular characterization of sclerospora graminicola, the incitant of pearl millet downy mildew using issr markers

Sudisha, J. and Ananda Kumar, S. and Thakur, Ram Padartha and Rao, Veeranki Panduranga and Shekar, H. (2009) Molecular characterization of sclerospora graminicola, the incitant of pearl millet downy mildew using issr markers. Journal of Phytopathology, 157 (11-12). pp. 748-755.

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The DNA polymorphism among 22 isolates of Sclerospora graminicola, the causal agent of downy mildew disease of pearl millet was assessed using 20 inter simple sequence repeats (ISSR) primers. The objective of the study was to examine the effectiveness of using ISSR markers for unravelling the extent and pattern of genetic diversity in 22 S. graminicola isolates collected from different host cultivars in different states of India. The 19 functional ISSR primers generated 410 polymorphic bands and revealed 89 polymorphism and were able to distinguish all the 22 isolates. Polymorphic bands used to construct an unweighted pair group method of averages (UPGMA) dendrogram based on Jaccard's co-efficient of similarity and principal coordinate analysis resulted in the formation of four major clusters of 22 isolates. The standardized Nei genetic distance among the 22 isolates ranged from 0.0050 to 0.0206. The UPGMA clustering using the standardized genetic distance matrix resulted in the identification of four clusters of the 22 isolates with bootstrap values ranging from 15 to 100. The 3D-scale data supported the UPGMA results, which resulted into four clusters amounting to 70 variation among each other. However, comparing the two methods show that sub clustering by dendrogram and multi dimensional scaling plot is slightly different. All the S. graminicola isolates had distinct ISSR genotypes and cluster analysis origin. The results of ISSR fingerprints revealed significant level of genetic diversity among the isolates and that ISSR markers could be a powerful tool for fingerprinting and diversity analysis in fungal pathogens.

Item Type: Article
Uncontrolled Keywords: Pennisetum glaucum and Sclerospora graminicola and DNA fingerprinting and inter simple ISSR markers
Subjects: B Life Science > Biotechnology
Divisions: Department of > Biotechnology
Depositing User: Users 19 not found.
Date Deposited: 03 Sep 2019 05:46
Last Modified: 03 Sep 2019 05:46

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